NPG-explorer 0.5.0 released

16 Jul 2015

NPG-explorer is a new tool for nucleotide pangenome construction and analysis of closely related prokaryotic genomes.

Version 0.5.0 was released on Jul 16, 2015.

This release has a focus on bug fixes and a few new developments.

Changes:

Change alignment requirements.
- Change meaning and default value of MIN_END.
- Add option FRAME_LENGTH.
Add processor CountSMS
Filter: increase size of gap score table to 1000
Tools.
- BLAST version: 2.2.29 -> 2.2.30
- Option npge -v [–version]
- Clarify option -g
- Hide option DEV_NULL from npge.conf
- GUI: show % of length occupied by low similarity
- Examine: do not recommend nan identity
Documentation.
- ECCB’14: add abstract in English (original)
- README: meaning of columns of *.bi files
- README: add blocks types algorithm (image)
Fix bugs.
- FreeBSD build fixes. Thanks to Dmitry Marakasov!
- Fix segfault in PrintPartition.
- Fix the bug in BlastFinder (crash on empty input).
- Fix windows x64 build.
- Do not apply UPX to 64-bit Windows executables.
- Lua code: compatibility with Lua >= 5.2.
- Find more locus_tag’s in GeneBank files.
- FindLowSimilar: fix division by zero.

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